WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46C2.1j.1 Sequence Name  C46C2.1j.1
Length (nt)  6500   Chromosome Location  IV: 9200110-9212227
Chromosome . Primary Identifier  IV Chromosome Location . Start  9200110
Chromosome Location . End  9212227 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46C2.1j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006941 wnk-1 C46C2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46C2.1j C46C2.1j 5532   IV: 9200431-9200439

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C46C2.1j.1 9200110 9212227 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon136381   330   IV: 9200110-9200439 Caenorhabditis elegans
Exon136402   79   IV: 9202246-9202324 Caenorhabditis elegans
Exon136418   70   IV: 9202629-9202698 Caenorhabditis elegans
Exon136434   85   IV: 9203293-9203377 Caenorhabditis elegans
Exon136451   443   IV: 9203709-9204151 Caenorhabditis elegans
Exon136477   302   IV: 9204207-9204508 Caenorhabditis elegans
Exon136497   323   IV: 9204578-9204900 Caenorhabditis elegans
Exon136517   1245   IV: 9204951-9206195 Caenorhabditis elegans
Exon136537   699   IV: 9206484-9207182 Caenorhabditis elegans
Exon136557   765   IV: 9207234-9207998 Caenorhabditis elegans
Exon136571   441   IV: 9208076-9208516 Caenorhabditis elegans
Exon136594   483   IV: 9209094-9209576 Caenorhabditis elegans
Exon136609   53   IV: 9210364-9210416 Caenorhabditis elegans
Exon136631   205   IV: 9210472-9210676 Caenorhabditis elegans
Exon136663   977   IV: 9211251-9212227 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C46C2.1j.1 9200110 9212227 1

1 Sequence

Length
6500

1 Sequence Ontology Term

Identifier Name Description
transcript