WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46C2.1t.1 Sequence Name  C46C2.1t.1
Length (nt)  5633   Chromosome Location  IV: 9200114-9211855
Chromosome . Primary Identifier  IV Chromosome Location . Start  9200114
Chromosome Location . End  9211855 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46C2.1t.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006941 wnk-1 C46C2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46C2.1t C46C2.1t 5055   IV: 9200431-9200439

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C46C2.1t.1 9200114 9211855 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon136385   326   IV: 9200114-9200439 Caenorhabditis elegans
Exon136411   79   IV: 9202246-9202324 Caenorhabditis elegans
Exon136427   70   IV: 9202629-9202698 Caenorhabditis elegans
Exon136443   85   IV: 9203293-9203377 Caenorhabditis elegans
Exon136467   437   IV: 9203715-9204151 Caenorhabditis elegans
Exon136487   302   IV: 9204207-9204508 Caenorhabditis elegans
Exon136507   323   IV: 9204578-9204900 Caenorhabditis elegans
Exon136527   1245   IV: 9204951-9206195 Caenorhabditis elegans
Exon136547   699   IV: 9206484-9207182 Caenorhabditis elegans
Exon136567   765   IV: 9207234-9207998 Caenorhabditis elegans
Exon136587   432   IV: 9208085-9208516 Caenorhabditis elegans
Exon136619   53   IV: 9210364-9210416 Caenorhabditis elegans
Exon136641   205   IV: 9210472-9210676 Caenorhabditis elegans
Exon136645   612   IV: 9211244-9211855 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C46C2.1t.1 9200114 9211855 1

1 Sequence

Length
5633

1 Sequence Ontology Term

Identifier Name Description
transcript