WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46C2.1q.1 Sequence Name  C46C2.1q.1
Length (nt)  5709   Chromosome Location  IV: 9200431-9212242
Chromosome . Primary Identifier  IV Chromosome Location . Start  9200431
Chromosome Location . End  9212242 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46C2.1q.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006941 wnk-1 C46C2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46C2.1q C46C2.1q 5061   IV: 9200431-9200439

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C46C2.1q.1 9200431 9212242 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon136340   9   IV: 9200431-9200439 Caenorhabditis elegans
Exon136353   79   IV: 9202246-9202324 Caenorhabditis elegans
Exon136369   70   IV: 9202629-9202698 Caenorhabditis elegans
Exon136385   85   IV: 9203293-9203377 Caenorhabditis elegans
Exon136402   443   IV: 9203709-9204151 Caenorhabditis elegans
Exon136429   302   IV: 9204207-9204508 Caenorhabditis elegans
Exon136449   323   IV: 9204578-9204900 Caenorhabditis elegans
Exon136469   1245   IV: 9204951-9206195 Caenorhabditis elegans
Exon136489   699   IV: 9206484-9207182 Caenorhabditis elegans
Exon136509   765   IV: 9207234-9207998 Caenorhabditis elegans
Exon136531   432   IV: 9208085-9208516 Caenorhabditis elegans
Exon136561   53   IV: 9210364-9210416 Caenorhabditis elegans
Exon136583   205   IV: 9210472-9210676 Caenorhabditis elegans
Exon136597   999   IV: 9211244-9212242 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C46C2.1q.1 9200431 9212242 1

1 Sequence

Length
5709

1 Sequence Ontology Term

Identifier Name Description
transcript