WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y11D7A.4.1 Sequence Name  Y11D7A.4.1
Length (nt)  911   Chromosome Location  IV: 9242074-9244012
Chromosome . Primary Identifier  IV Chromosome Location . Start  9242074
Chromosome Location . End  9244012 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y11D7A.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004281 rab-28 Y11D7A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y11D7A.4 Y11D7A.4 747   IV: 9242225-9242293

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y11D7A.4.1 9242074 9244012 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon136668   220   IV: 9242074-9242293 Caenorhabditis elegans
Exon136669   97   IV: 9242367-9242463 Caenorhabditis elegans
Exon136670   152   IV: 9242628-9242779 Caenorhabditis elegans
Exon136671   165   IV: 9242850-9243014 Caenorhabditis elegans
Exon136672   66   IV: 9243286-9243351 Caenorhabditis elegans
Exon136673   87   IV: 9243426-9243512 Caenorhabditis elegans
Exon136674   124   IV: 9243889-9244012 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y11D7A.4.1 9242074 9244012 -1

1 Sequence

Length
911

1 Sequence Ontology Term

Identifier Name Description
transcript