WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C10C5.1j.1 Sequence Name  C10C5.1j.1
Length (nt)  5567   Chromosome Location  IV: 9343363-9355568
Chromosome . Primary Identifier  IV Chromosome Location . Start  9343363
Chromosome Location . End  9355568 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C10C5.1j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007505 pezo-1 C10C5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C10C5.1j C10C5.1j 5193   IV: 9343737-9343823

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C10C5.1j.1 9343363 9355568 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon136956   461   IV: 9343363-9343823 Caenorhabditis elegans
Exon136973   134   IV: 9343890-9344023 Caenorhabditis elegans
Exon136985   584   IV: 9344074-9344657 Caenorhabditis elegans
Exon136997   591   IV: 9345003-9345593 Caenorhabditis elegans
Exon137009   583   IV: 9345647-9346229 Caenorhabditis elegans
Exon137021   115   IV: 9346281-9346395 Caenorhabditis elegans
Exon137033   915   IV: 9346454-9347368 Caenorhabditis elegans
Exon137046   131   IV: 9349033-9349163 Caenorhabditis elegans
Exon137048   78   IV: 9349901-9349978 Caenorhabditis elegans
Exon137058   65   IV: 9350360-9350424 Caenorhabditis elegans
Exon137069   111   IV: 9350476-9350586 Caenorhabditis elegans
Exon137080   54   IV: 9351514-9351567 Caenorhabditis elegans
Exon137091   233   IV: 9351616-9351848 Caenorhabditis elegans
Exon137102   515   IV: 9351897-9352411 Caenorhabditis elegans
Exon137113   104   IV: 9352458-9352561 Caenorhabditis elegans
Exon137124   572   IV: 9352840-9353411 Caenorhabditis elegans
Exon137135   125   IV: 9353466-9353590 Caenorhabditis elegans
Exon137138   196   IV: 9355373-9355568 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C10C5.1j.1 9343363 9355568 -1

1 Sequence

Length
5567

1 Sequence Ontology Term

Identifier Name Description
transcript