WormMine: Gene WBGene00195550

• WormBase Gene ID: WBGene00195550
• Gene Name: C10C5.9
• Sequence Name: C10C5.9
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by cep-1 and dlc-1 based on RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 128

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00195550

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:C10C5.9	C10C5.9	128	IV: 9366884-9367011

Other

0 CDSs

0 RNAi Result

7 Allele

• gk964278
• gk964500
• gk962765
• gk962666
• tm10725
• tm10726
• gk208832

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00195550
• Start: 9366884
• End: 9367011
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_9367012..9371507
• Length (nt): 4496
• Chromosome Location: IV: 9367012-9371507
• Organism: Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that interact with 3xFLAG-DLC-1 as identified by immunoprecipitation followed by RNA sequencing.	DESeq2, fold change > 2,, p-value < 0.01	WBPaper00055334:DLC-1_interacting
	ncRNAs with significantly increased expression in cep-1(gk138) than in N2 after UV irradiation, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_upregulated_UV

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00195550
• Start: 9366884
• End: 9367011
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 128

1 Sequence Ontology Term