WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F38E11.12.1 Sequence Name  F38E11.12.1
Length (nt)  1959   Chromosome Location  IV: 9477522-9481037
Chromosome . Primary Identifier  IV Chromosome Location . Start  9477522
Chromosome Location . End  9481037 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38E11.12.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000563 cng-3 F38E11.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F38E11.12 F38E11.12 1881   IV: 9477522-9477611

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F38E11.12.1 9477522 9481037 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon137677   90   IV: 9477522-9477611 Caenorhabditis elegans
Exon137680   149   IV: 9477824-9477972 Caenorhabditis elegans
Exon137681   247   IV: 9478083-9478329 Caenorhabditis elegans
Exon137682   99   IV: 9478379-9478477 Caenorhabditis elegans
Exon137683   172   IV: 9478724-9478895 Caenorhabditis elegans
Exon137684   264   IV: 9478981-9479244 Caenorhabditis elegans
Exon137687   118   IV: 9479317-9479434 Caenorhabditis elegans
Exon137688   66   IV: 9479659-9479724 Caenorhabditis elegans
Exon137689   109   IV: 9479781-9479889 Caenorhabditis elegans
Exon137690   151   IV: 9479936-9480086 Caenorhabditis elegans
Exon137691   64   IV: 9480233-9480296 Caenorhabditis elegans
Exon137692   203   IV: 9480420-9480622 Caenorhabditis elegans
Exon137693   227   IV: 9480811-9481037 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F38E11.12.1 9477522 9481037 -1

1 Sequence

Length
1959

1 Sequence Ontology Term

Identifier Name Description
transcript