WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A1.1b.2 Sequence Name  T05A1.1b.2
Length (nt)  1395   Chromosome Location  IV: 9568830-9571949
Chromosome . Primary Identifier  IV Chromosome Location . Start  9568830
Chromosome Location . End  9571949 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A1.1b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003808 npr-2 T05A1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A1.1b T05A1.1b 1164   IV: 9569061-9569102

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T05A1.1b.2 9568830 9571949 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

8 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon137959   273   IV: 9568830-9569102 Caenorhabditis elegans
Exon137964   142   IV: 9569265-9569406 Caenorhabditis elegans
Exon137968   140   IV: 9569624-9569763 Caenorhabditis elegans
Exon137972   87   IV: 9569920-9570006 Caenorhabditis elegans
Exon137976   97   IV: 9570465-9570561 Caenorhabditis elegans
Exon137980   338   IV: 9570612-9570949 Caenorhabditis elegans
Exon137984   175   IV: 9571555-9571729 Caenorhabditis elegans
Exon137988   143   IV: 9571807-9571949 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T05A1.1b.2 9568830 9571949 -1

1 Sequence

Length
1395

1 Sequence Ontology Term

Identifier Name Description
transcript