WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A1.1a.1 Sequence Name  T05A1.1a.1
Length (nt)  1595   Chromosome Location  IV: 9568828-9580121
Chromosome . Primary Identifier  IV Chromosome Location . Start  9568828
Chromosome Location . End  9580121 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A1.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003808 npr-2 T05A1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A1.1a T05A1.1a 1293   IV: 9569061-9569102

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T05A1.1a.1 9568828 9580121 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon137979   275   IV: 9568828-9569102 Caenorhabditis elegans
Exon137983   142   IV: 9569265-9569406 Caenorhabditis elegans
Exon137987   140   IV: 9569624-9569763 Caenorhabditis elegans
Exon137991   87   IV: 9569920-9570006 Caenorhabditis elegans
Exon137995   97   IV: 9570465-9570561 Caenorhabditis elegans
Exon137999   338   IV: 9570612-9570949 Caenorhabditis elegans
Exon138003   175   IV: 9571555-9571729 Caenorhabditis elegans
Exon138007   143   IV: 9571807-9571949 Caenorhabditis elegans
Exon138012   87   IV: 9576397-9576483 Caenorhabditis elegans
Exon138014   111   IV: 9580011-9580121 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T05A1.1a.1 9568828 9580121 -1

1 Sequence

Length
1595

1 Sequence Ontology Term

Identifier Name Description
transcript