WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T05A1.1a Sequence Name  T05A1.1a
Length (nt)  1293   Chromosome Location  IV: 9569061-9569102
Chromosome . Primary Identifier  IV Chromosome Location . Start  9569061
Chromosome Location . End  9569102
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A1.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE32924 NPR-2, isoform a 49.1 430 Caenorhabditis elegans
 

Other

5 RNAi

WormBase ID
WBRNAi00052424
WBRNAi00072223
WBRNAi00075428
WBRNAi00018164
WBRNAi00035156

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T05A1.1a 9569061 9569102 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003808 npr-2 T05A1.1 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:T05A1.1a 9569061 9569102 -1
CDS:T05A1.1a 9569265 9569406 -1
CDS:T05A1.1a 9569624 9569763 -1
CDS:T05A1.1a 9569920 9570006 -1
CDS:T05A1.1a 9570465 9570561 -1
CDS:T05A1.1a 9570612 9570949 -1
CDS:T05A1.1a 9571555 9571729 -1
CDS:T05A1.1a 9571807 9571949 -1
CDS:T05A1.1a 9576397 9576483 -1
CDS:T05A1.1a 9580011 9580052 -1

1 Sequence

Length
1293

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T05A1.1a.1 T05A1.1a.1 1595   IV: 9568828-9580121