WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W09C2.3a.1 Sequence Name  W09C2.3a.1
Length (nt)  4450   Chromosome Location  IV: 9625911-9634948
Chromosome . Primary Identifier  IV Chromosome Location . Start  9625911
Chromosome Location . End  9634948 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W09C2.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003151 mca-1 W09C2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W09C2.3a W09C2.3a 3759   IV: 9626523-9626582

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W09C2.3a.1 9625911 9634948 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138089   672   IV: 9625911-9626582 Caenorhabditis elegans
Exon138091   131   IV: 9626631-9626761 Caenorhabditis elegans
Exon138095   142   IV: 9626816-9626957 Caenorhabditis elegans
Exon138099   1392   IV: 9627005-9628396 Caenorhabditis elegans
Exon138104   1236   IV: 9628746-9629981 Caenorhabditis elegans
Exon138108   156   IV: 9630037-9630192 Caenorhabditis elegans
Exon138113   282   IV: 9630237-9630518 Caenorhabditis elegans
Exon138116   177   IV: 9630614-9630790 Caenorhabditis elegans
Exon138119   78   IV: 9631241-9631318 Caenorhabditis elegans
Exon138124   184   IV: 9634765-9634948 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W09C2.3a.1 9625911 9634948 -1

1 Sequence

Length
4450

1 Sequence Ontology Term

Identifier Name Description
transcript