WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F58G6.6a.1 Sequence Name  F58G6.6a.1
Length (nt)  2027   Chromosome Location  IV: 9636905-9642025
Chromosome . Primary Identifier  IV Chromosome Location . Start  9636905
Chromosome Location . End  9642025 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F58G6.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000953 del-2 F58G6.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F58G6.6a F58G6.6a 1752   IV: 9637210-9637386

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F58G6.6a.1 9636905 9642025 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138126   249   IV: 9636905-9637153 Caenorhabditis elegans
Exon138127   181   IV: 9637206-9637386 Caenorhabditis elegans
Exon138129   151   IV: 9637554-9637704 Caenorhabditis elegans
Exon138131   290   IV: 9637751-9638040 Caenorhabditis elegans
Exon138133   70   IV: 9638104-9638173 Caenorhabditis elegans
Exon138135   227   IV: 9638311-9638537 Caenorhabditis elegans
Exon138137   352   IV: 9638631-9638982 Caenorhabditis elegans
Exon138140   122   IV: 9639066-9639187 Caenorhabditis elegans
Exon138141   115   IV: 9640104-9640218 Caenorhabditis elegans
Exon138142   100   IV: 9640414-9640513 Caenorhabditis elegans
Exon138143   65   IV: 9640561-9640625 Caenorhabditis elegans
Exon138144   105   IV: 9641921-9642025 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F58G6.6a.1 9636905 9642025 -1

1 Sequence

Length
2027

1 Sequence Ontology Term

Identifier Name Description
transcript