WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F58G6.5c.2 Sequence Name  F58G6.5c.2
Length (nt)  2285   Chromosome Location  IV: 9664360-9675671
Chromosome . Primary Identifier  IV Chromosome Location . Start  9664360
Chromosome Location . End  9675671 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F58G6.5c.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003627 nhr-34 F58G6.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F58G6.5c F58G6.5c 1896   IV: 9664684-9664794

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F58G6.5c.2 9664360 9675671 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138259   435   IV: 9664360-9664794 Caenorhabditis elegans
Exon138267   138   IV: 9664946-9665083 Caenorhabditis elegans
Exon138272   161   IV: 9665130-9665290 Caenorhabditis elegans
Exon138277   214   IV: 9665423-9665636 Caenorhabditis elegans
Exon138282   189   IV: 9665684-9665872 Caenorhabditis elegans
Exon138287   333   IV: 9666033-9666365 Caenorhabditis elegans
Exon138292   217   IV: 9666465-9666681 Caenorhabditis elegans
Exon138297   100   IV: 9666770-9666869 Caenorhabditis elegans
Exon138303   216   IV: 9668861-9669076 Caenorhabditis elegans
Exon138308   122   IV: 9669183-9669304 Caenorhabditis elegans
Exon138311   104   IV: 9672567-9672670 Caenorhabditis elegans
Exon138314   56   IV: 9675616-9675671 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F58G6.5c.2 9664360 9675671 -1

1 Sequence

Length
2285

1 Sequence Ontology Term

Identifier Name Description
transcript