WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C28D4.2b.1 Sequence Name  C28D4.2b.1
Length (nt)  1625   Chromosome Location  IV: 9731740-9733928
Chromosome . Primary Identifier  IV Chromosome Location . Start  9731740
Chromosome Location . End  9733928 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C28D4.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000509 cka-1 C28D4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C28D4.2b C28D4.2b 1347   IV: 9732018-9732269

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C28D4.2b.1 9731740 9733928 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138452   530   IV: 9731740-9732269 Caenorhabditis elegans
Exon138455   148   IV: 9732326-9732473 Caenorhabditis elegans
Exon138458   131   IV: 9732522-9732652 Caenorhabditis elegans
Exon138461   108   IV: 9732784-9732891 Caenorhabditis elegans
Exon138464   67   IV: 9732947-9733013 Caenorhabditis elegans
Exon138467   111   IV: 9733067-9733177 Caenorhabditis elegans
Exon138470   103   IV: 9733223-9733325 Caenorhabditis elegans
Exon138473   152   IV: 9733410-9733561 Caenorhabditis elegans
Exon138476   137   IV: 9733609-9733745 Caenorhabditis elegans
Exon138479   138   IV: 9733791-9733928 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C28D4.2b.1 9731740 9733928 -1

1 Sequence

Length
1625

1 Sequence Ontology Term

Identifier Name Description
transcript