WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C28D4.2a.1 Sequence Name  C28D4.2a.1
Length (nt)  1706   Chromosome Location  IV: 9731737-9737621
Chromosome . Primary Identifier  IV Chromosome Location . Start  9731737
Chromosome Location . End  9737621 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C28D4.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000509 cka-1 C28D4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C28D4.2a C28D4.2a 1425   IV: 9732018-9732269

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C28D4.2a.1 9731737 9737621 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138506   533   IV: 9731737-9732269 Caenorhabditis elegans
Exon138509   148   IV: 9732326-9732473 Caenorhabditis elegans
Exon138512   131   IV: 9732522-9732652 Caenorhabditis elegans
Exon138515   108   IV: 9732784-9732891 Caenorhabditis elegans
Exon138518   67   IV: 9732947-9733013 Caenorhabditis elegans
Exon138521   111   IV: 9733067-9733177 Caenorhabditis elegans
Exon138524   103   IV: 9733223-9733325 Caenorhabditis elegans
Exon138527   152   IV: 9733410-9733561 Caenorhabditis elegans
Exon138530   137   IV: 9733609-9733745 Caenorhabditis elegans
Exon138533   138   IV: 9733791-9733928 Caenorhabditis elegans
Exon138536   78   IV: 9737544-9737621 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C28D4.2a.1 9731737 9737621 -1

1 Sequence

Length
1706

1 Sequence Ontology Term

Identifier Name Description
transcript