WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C28D4.2c.1 Sequence Name  C28D4.2c.1
Length (nt)  1636   Chromosome Location  IV: 9731740-9733930
Chromosome . Primary Identifier  IV Chromosome Location . Start  9731740
Chromosome Location . End  9733930 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C28D4.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000509 cka-1 C28D4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C28D4.2c C28D4.2c 1356   IV: 9732018-9732269

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C28D4.2c.1 9731740 9733930 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138508   530   IV: 9731740-9732269 Caenorhabditis elegans
Exon138511   148   IV: 9732326-9732473 Caenorhabditis elegans
Exon138514   131   IV: 9732522-9732652 Caenorhabditis elegans
Exon138517   117   IV: 9732784-9732900 Caenorhabditis elegans
Exon138520   67   IV: 9732947-9733013 Caenorhabditis elegans
Exon138523   111   IV: 9733067-9733177 Caenorhabditis elegans
Exon138526   103   IV: 9733223-9733325 Caenorhabditis elegans
Exon138529   152   IV: 9733410-9733561 Caenorhabditis elegans
Exon138532   137   IV: 9733609-9733745 Caenorhabditis elegans
Exon138535   140   IV: 9733791-9733930 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C28D4.2c.1 9731740 9733930 -1

1 Sequence

Length
1636

1 Sequence Ontology Term

Identifier Name Description
transcript