WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T13F2.3a.1 Sequence Name  T13F2.3a.1
Length (nt)  3391   Chromosome Location  IV: 9791933-9796594
Chromosome . Primary Identifier  IV Chromosome Location . Start  9791933
Chromosome Location . End  9796594 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T13F2.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004031 pis-1 T13F2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T13F2.3a T13F2.3a 3225   IV: 9792094-9792305

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T13F2.3a.1 9791933 9796594 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138595   373   IV: 9791933-9792305 Caenorhabditis elegans
Exon138597   90   IV: 9792355-9792444 Caenorhabditis elegans
Exon138599   216   IV: 9792765-9792980 Caenorhabditis elegans
Exon138601   486   IV: 9793036-9793521 Caenorhabditis elegans
Exon138603   215   IV: 9793574-9793788 Caenorhabditis elegans
Exon138605   122   IV: 9793918-9794039 Caenorhabditis elegans
Exon138607   243   IV: 9794090-9794332 Caenorhabditis elegans
Exon138609   329   IV: 9794388-9794716 Caenorhabditis elegans
Exon138611   150   IV: 9794952-9795101 Caenorhabditis elegans
Exon138613   360   IV: 9795160-9795519 Caenorhabditis elegans
Exon138615   313   IV: 9795587-9795899 Caenorhabditis elegans
Exon138617   155   IV: 9795944-9796098 Caenorhabditis elegans
Exon138619   99   IV: 9796147-9796245 Caenorhabditis elegans
Exon138621   61   IV: 9796298-9796358 Caenorhabditis elegans
Exon138624   179   IV: 9796416-9796594 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T13F2.3a.1 9791933 9796594 -1

1 Sequence

Length
3391

1 Sequence Ontology Term

Identifier Name Description
transcript