WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T13F2.3b.1 Sequence Name  T13F2.3b.1
Length (nt)  3391   Chromosome Location  IV: 9791937-9796592
Chromosome . Primary Identifier  IV Chromosome Location . Start  9791937
Chromosome Location . End  9796592 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T13F2.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004031 pis-1 T13F2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T13F2.3b T13F2.3b 3231   IV: 9792094-9792305

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T13F2.3b.1 9791937 9796592 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138596   369   IV: 9791937-9792305 Caenorhabditis elegans
Exon138598   90   IV: 9792355-9792444 Caenorhabditis elegans
Exon138600   216   IV: 9792765-9792980 Caenorhabditis elegans
Exon138602   486   IV: 9793036-9793521 Caenorhabditis elegans
Exon138604   215   IV: 9793574-9793788 Caenorhabditis elegans
Exon138606   122   IV: 9793918-9794039 Caenorhabditis elegans
Exon138608   243   IV: 9794090-9794332 Caenorhabditis elegans
Exon138610   329   IV: 9794388-9794716 Caenorhabditis elegans
Exon138612   150   IV: 9794952-9795101 Caenorhabditis elegans
Exon138614   360   IV: 9795160-9795519 Caenorhabditis elegans
Exon138616   313   IV: 9795587-9795899 Caenorhabditis elegans
Exon138618   155   IV: 9795944-9796098 Caenorhabditis elegans
Exon138620   105   IV: 9796147-9796251 Caenorhabditis elegans
Exon138622   61   IV: 9796298-9796358 Caenorhabditis elegans
Exon138623   177   IV: 9796416-9796592 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T13F2.3b.1 9791937 9796592 -1

1 Sequence

Length
3391

1 Sequence Ontology Term

Identifier Name Description
transcript