WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W08D2.1.1 Sequence Name  W08D2.1.1
Length (nt)  1873   Chromosome Location  IV: 9812418-9815526
Chromosome . Primary Identifier  IV Chromosome Location . Start  9812418
Chromosome Location . End  9815526 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W08D2.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001188 egl-20 W08D2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W08D2.1 W08D2.1 1182   IV: 9813183-9813278

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W08D2.1.1 9812418 9815526 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138701   685   IV: 9812418-9813102 Caenorhabditis elegans
Exon138703   97   IV: 9813182-9813278 Caenorhabditis elegans
Exon138705   101   IV: 9813605-9813705 Caenorhabditis elegans
Exon138708   127   IV: 9813765-9813891 Caenorhabditis elegans
Exon138711   144   IV: 9814011-9814154 Caenorhabditis elegans
Exon138714   171   IV: 9814201-9814371 Caenorhabditis elegans
Exon138717   140   IV: 9814421-9814560 Caenorhabditis elegans
Exon138720   83   IV: 9814960-9815042 Caenorhabditis elegans
Exon138723   80   IV: 9815101-9815180 Caenorhabditis elegans
Exon138726   133   IV: 9815234-9815366 Caenorhabditis elegans
Exon138729   112   IV: 9815415-9815526 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W08D2.1.1 9812418 9815526 -1

1 Sequence

Length
1873

1 Sequence Ontology Term

Identifier Name Description
transcript