WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W08D2.5a.1 Sequence Name  W08D2.5a.1
Length (nt)  4102   Chromosome Location  IV: 9817412-9824580
Chromosome . Primary Identifier  IV Chromosome Location . Start  9817412
Chromosome Location . End  9824580 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W08D2.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012341 catp-6 W08D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W08D2.5a W08D2.5a 3804   IV: 9817710-9817842

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:W08D2.5a.1 9817412 9824580 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138712   431   IV: 9817412-9817842 Caenorhabditis elegans
Exon138715   180   IV: 9817898-9818077 Caenorhabditis elegans
Exon138718   179   IV: 9818121-9818299 Caenorhabditis elegans
Exon138721   387   IV: 9818779-9819165 Caenorhabditis elegans
Exon138724   212   IV: 9819212-9819423 Caenorhabditis elegans
Exon138727   388   IV: 9819468-9819855 Caenorhabditis elegans
Exon138730   163   IV: 9819903-9820065 Caenorhabditis elegans
Exon138733   194   IV: 9820110-9820303 Caenorhabditis elegans
Exon138736   331   IV: 9820350-9820680 Caenorhabditis elegans
Exon138739   221   IV: 9820729-9820949 Caenorhabditis elegans
Exon138742   104   IV: 9820996-9821099 Caenorhabditis elegans
Exon138745   142   IV: 9821157-9821298 Caenorhabditis elegans
Exon138749   105   IV: 9821346-9821450 Caenorhabditis elegans
Exon138756   120   IV: 9823096-9823215 Caenorhabditis elegans
Exon138758   129   IV: 9823267-9823395 Caenorhabditis elegans
Exon138760   79   IV: 9823441-9823519 Caenorhabditis elegans
Exon138762   111   IV: 9823568-9823678 Caenorhabditis elegans
Exon138764   344   IV: 9823726-9824069 Caenorhabditis elegans
Exon138766   52   IV: 9824134-9824185 Caenorhabditis elegans
Exon138769   131   IV: 9824229-9824359 Caenorhabditis elegans
Exon138770   99   IV: 9824482-9824580 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:W08D2.5a.1 9817412 9824580 -1

1 Sequence

Length
4102

1 Sequence Ontology Term

Identifier Name Description
transcript