WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W08D2.5a.1 Sequence Name  W08D2.5a.1
Length (nt)  4102   Chromosome Location  IV: 9817412-9824580
Chromosome . Primary Identifier  IV Chromosome Location . Start  9817412
Chromosome Location . End  9824580 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W08D2.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012341 catp-6 W08D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W08D2.5a W08D2.5a 3804   IV: 9817710-9817842

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:W08D2.5a.1 9817412 9824580 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138733   431   IV: 9817412-9817842 Caenorhabditis elegans
Exon138736   180   IV: 9817898-9818077 Caenorhabditis elegans
Exon138739   179   IV: 9818121-9818299 Caenorhabditis elegans
Exon138742   387   IV: 9818779-9819165 Caenorhabditis elegans
Exon138745   212   IV: 9819212-9819423 Caenorhabditis elegans
Exon138748   388   IV: 9819468-9819855 Caenorhabditis elegans
Exon138751   163   IV: 9819903-9820065 Caenorhabditis elegans
Exon138754   194   IV: 9820110-9820303 Caenorhabditis elegans
Exon138757   331   IV: 9820350-9820680 Caenorhabditis elegans
Exon138760   221   IV: 9820729-9820949 Caenorhabditis elegans
Exon138763   104   IV: 9820996-9821099 Caenorhabditis elegans
Exon138766   142   IV: 9821157-9821298 Caenorhabditis elegans
Exon138770   105   IV: 9821346-9821450 Caenorhabditis elegans
Exon138777   120   IV: 9823096-9823215 Caenorhabditis elegans
Exon138779   129   IV: 9823267-9823395 Caenorhabditis elegans
Exon138781   79   IV: 9823441-9823519 Caenorhabditis elegans
Exon138783   111   IV: 9823568-9823678 Caenorhabditis elegans
Exon138785   344   IV: 9823726-9824069 Caenorhabditis elegans
Exon138787   52   IV: 9824134-9824185 Caenorhabditis elegans
Exon138790   131   IV: 9824229-9824359 Caenorhabditis elegans
Exon138791   99   IV: 9824482-9824580 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:W08D2.5a.1 9817412 9824580 -1

1 Sequence

Length
4102

1 Sequence Ontology Term

Identifier Name Description
transcript