WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W08D2.1.3 Sequence Name  W08D2.1.3
Length (nt)  1925   Chromosome Location  IV: 9812357-9815532
Chromosome . Primary Identifier  IV Chromosome Location . Start  9812357
Chromosome Location . End  9815532 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W08D2.1.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001188 egl-20 W08D2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W08D2.1 W08D2.1 1182   IV: 9813183-9813278

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W08D2.1.3 9812357 9815532 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138734   731   IV: 9812357-9813087 Caenorhabditis elegans
Exon138738   97   IV: 9813182-9813278 Caenorhabditis elegans
Exon138741   101   IV: 9813605-9813705 Caenorhabditis elegans
Exon138744   127   IV: 9813765-9813891 Caenorhabditis elegans
Exon138747   144   IV: 9814011-9814154 Caenorhabditis elegans
Exon138750   171   IV: 9814201-9814371 Caenorhabditis elegans
Exon138753   140   IV: 9814421-9814560 Caenorhabditis elegans
Exon138756   83   IV: 9814960-9815042 Caenorhabditis elegans
Exon138759   80   IV: 9815101-9815180 Caenorhabditis elegans
Exon138762   133   IV: 9815234-9815366 Caenorhabditis elegans
Exon138765   118   IV: 9815415-9815532 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W08D2.1.3 9812357 9815532 -1

1 Sequence

Length
1925

1 Sequence Ontology Term

Identifier Name Description
transcript