WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W08D2.7.1 Sequence Name  W08D2.7.1
Length (nt)  3224   Chromosome Location  IV: 9825694-9830620
Chromosome . Primary Identifier  IV Chromosome Location . Start  9825694
Chromosome Location . End  9830620 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W08D2.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012342 mtr-4 W08D2.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W08D2.7 W08D2.7 3081   IV: 9825699-9825755

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:W08D2.7.1 9825694 9830620 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138828   62   IV: 9825694-9825755 Caenorhabditis elegans
Exon138829   33   IV: 9825817-9825849 Caenorhabditis elegans
Exon138830   300   IV: 9825896-9826195 Caenorhabditis elegans
Exon138831   83   IV: 9826241-9826323 Caenorhabditis elegans
Exon138832   266   IV: 9826374-9826639 Caenorhabditis elegans
Exon138833   99   IV: 9826685-9826783 Caenorhabditis elegans
Exon138834   125   IV: 9826835-9826959 Caenorhabditis elegans
Exon138835   327   IV: 9827008-9827334 Caenorhabditis elegans
Exon138836   330   IV: 9827383-9827712 Caenorhabditis elegans
Exon138837   151   IV: 9828095-9828245 Caenorhabditis elegans
Exon138838   173   IV: 9828295-9828467 Caenorhabditis elegans
Exon138839   86   IV: 9828521-9828606 Caenorhabditis elegans
Exon138840   94   IV: 9828867-9828960 Caenorhabditis elegans
Exon138841   183   IV: 9829007-9829189 Caenorhabditis elegans
Exon138842   267   IV: 9829309-9829575 Caenorhabditis elegans
Exon138843   186   IV: 9829620-9829805 Caenorhabditis elegans
Exon138844   163   IV: 9829852-9830014 Caenorhabditis elegans
Exon138845   296   IV: 9830325-9830620 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:W08D2.7.1 9825694 9830620 1

1 Sequence

Length
3224

1 Sequence Ontology Term

Identifier Name Description
transcript