WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K07F5.13c.1 Sequence Name  K07F5.13c.1
Length (nt)  2295   Chromosome Location  IV: 9858488-9862116
Chromosome . Primary Identifier  IV Chromosome Location . Start  9858488
Chromosome Location . End  9862116 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K07F5.13c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003787 npp-1 K07F5.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K07F5.13c K07F5.13c 1920   IV: 9858492-9858589

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K07F5.13c.1 9858488 9862116 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138835   102   IV: 9858488-9858589 Caenorhabditis elegans
Exon138840   104   IV: 9858638-9858741 Caenorhabditis elegans
Exon138842   105   IV: 9858822-9858926 Caenorhabditis elegans
Exon138844   270   IV: 9859598-9859867 Caenorhabditis elegans
Exon138847   182   IV: 9860106-9860287 Caenorhabditis elegans
Exon138850   180   IV: 9860344-9860523 Caenorhabditis elegans
Exon138853   394   IV: 9860574-9860967 Caenorhabditis elegans
Exon138856   179   IV: 9861062-9861240 Caenorhabditis elegans
Exon138859   198   IV: 9861291-9861488 Caenorhabditis elegans
Exon138861   581   IV: 9861536-9862116 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K07F5.13c.1 9858488 9862116 1

1 Sequence

Length
2295

1 Sequence Ontology Term

Identifier Name Description
transcript