WormMine: Gene WBGene00200908

• WormBase Gene ID: WBGene00200908
• Gene Name: K07F5.20
• Sequence Name: K07F5.20
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by pmt-2 and ogt-1 based on microarray and RNA-seq studies. Is affected by iron oxide nanoparticle based on microarray studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 114

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00200908

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:K07F5.20	K07F5.20	114	IV: 9874628-9874741

Other

0 CDSs

0 RNAi Result

8 Allele

• gk964278
• gk964078
• gk964500
• gk962765
• gk964226
• gk964227
• gk896776
• gk620607

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00200908
• Start: 9874628
• End: 9874741
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_9866150..9874627
• Length (nt): 8478
• Chromosome Location: IV: 9866150-9874627
• Organism: Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in pmt-2(RNAi) animals comparing to control animals iinjected with empty vector.	Fold-change > 1.5, ANOVA P values < 0.05.	WBPaper00055482:pmt-2(RNAi)_upregulated
	Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
	Most down-regulated genes after Cit-SPIONs exposure (p<0.01).	Past 3.03 was used for all statistical analyses. Statistical significance between two groups was assessed by t tests. A gene is determined to be differentially expressed when p < 0.01 and only 75 genes were selected as differentially regulated for each expression cluster.	WBPaper00051437:Cit-SPIONs_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00200908
• Start: 9874628
• End: 9874741
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 114

1 Sequence Ontology Term