WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00220005 Gene Name  K04D7.17
Sequence Name  ? K04D7.17 Organism  Caenorhabditis elegans
Automated Description  Is affected by dpy-21 based on RNA-seq studies. Biotype  SO:0001267
Genetic Position  :± Length (nt)  ? 185
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00220005

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K04D7.17 K04D7.17 185   IV: 10176491-10176675
 

Other

0 CDSs

0 RNAi Result

7 Allele

Public Name
gk964278
gk964078
gk964500
gk962765
gk963603
gk912348
WBVar01856705

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00220005 10176491 10176675 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_10176676..10176679   4 IV: 10176676-10176679 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage. DESeq v1.6.3. Fold change > 1.5. WBPaper00050370:dpy-21(e428)_L3_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00220005 10176491 10176675 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
185

1 Sequence Ontology Term