WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K04D7.4b.1 Sequence Name  K04D7.4b.1
Length (nt)  3342   Chromosome Location  IV: 10183950-10193365
Chromosome . Primary Identifier  IV Chromosome Location . Start  10183950
Chromosome Location . End  10193365 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K04D7.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010558 ptrg-1 K04D7.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K04D7.4b K04D7.4b 3342   IV: 10183950-10184009

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:K04D7.4b.1 10183950 10193365 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon140302   60   IV: 10183950-10184009 Caenorhabditis elegans
Exon140304   134   IV: 10184060-10184193 Caenorhabditis elegans
Exon140306   469   IV: 10184384-10184852 Caenorhabditis elegans
Exon140308   147   IV: 10184904-10185050 Caenorhabditis elegans
Exon140310   136   IV: 10185103-10185238 Caenorhabditis elegans
Exon140312   281   IV: 10185289-10185569 Caenorhabditis elegans
Exon140314   135   IV: 10185613-10185747 Caenorhabditis elegans
Exon140316   272   IV: 10185867-10186138 Caenorhabditis elegans
Exon140318   237   IV: 10186190-10186426 Caenorhabditis elegans
Exon140320   130   IV: 10186473-10186602 Caenorhabditis elegans
Exon140322   79   IV: 10186652-10186730 Caenorhabditis elegans
Exon140324   181   IV: 10186775-10186955 Caenorhabditis elegans
Exon140326   94   IV: 10187282-10187375 Caenorhabditis elegans
Exon140328   568   IV: 10187423-10187990 Caenorhabditis elegans
Exon140330   145   IV: 10188040-10188184 Caenorhabditis elegans
Exon140334   190   IV: 10190113-10190302 Caenorhabditis elegans
Exon140338   84   IV: 10193282-10193365 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:K04D7.4b.1 10183950 10193365 -1

1 Sequence

Length
3342

1 Sequence Ontology Term

Identifier Name Description
transcript