WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K04D7.4b.1 Sequence Name  K04D7.4b.1
Length (nt)  3342   Chromosome Location  IV: 10183950-10193365
Chromosome . Primary Identifier  IV Chromosome Location . Start  10183950
Chromosome Location . End  10193365 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K04D7.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010558 ptrg-1 K04D7.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K04D7.4b K04D7.4b 3342   IV: 10183950-10184009

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:K04D7.4b.1 10183950 10193365 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon140357   60   IV: 10183950-10184009 Caenorhabditis elegans
Exon140359   134   IV: 10184060-10184193 Caenorhabditis elegans
Exon140361   469   IV: 10184384-10184852 Caenorhabditis elegans
Exon140363   147   IV: 10184904-10185050 Caenorhabditis elegans
Exon140365   136   IV: 10185103-10185238 Caenorhabditis elegans
Exon140367   281   IV: 10185289-10185569 Caenorhabditis elegans
Exon140369   135   IV: 10185613-10185747 Caenorhabditis elegans
Exon140371   272   IV: 10185867-10186138 Caenorhabditis elegans
Exon140373   237   IV: 10186190-10186426 Caenorhabditis elegans
Exon140375   130   IV: 10186473-10186602 Caenorhabditis elegans
Exon140377   79   IV: 10186652-10186730 Caenorhabditis elegans
Exon140379   181   IV: 10186775-10186955 Caenorhabditis elegans
Exon140381   94   IV: 10187282-10187375 Caenorhabditis elegans
Exon140383   568   IV: 10187423-10187990 Caenorhabditis elegans
Exon140385   145   IV: 10188040-10188184 Caenorhabditis elegans
Exon140389   190   IV: 10190113-10190302 Caenorhabditis elegans
Exon140393   84   IV: 10193282-10193365 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:K04D7.4b.1 10183950 10193365 -1

1 Sequence

Length
3342

1 Sequence Ontology Term

Identifier Name Description
transcript