WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y43C5A.2.1 Sequence Name  Y43C5A.2.1
Length (nt)  1446   Chromosome Location  IV: 10269883-10272701
Chromosome . Primary Identifier  IV Chromosome Location . Start  10269883
Chromosome Location . End  10272701 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y43C5A.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012782 Y43C5A.2 Y43C5A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y43C5A.2 Y43C5A.2 1359   IV: 10269900-10269941

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y43C5A.2.1 10269883 10272701 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon140568   59   IV: 10269883-10269941 Caenorhabditis elegans
Exon140569   146   IV: 10270499-10270644 Caenorhabditis elegans
Exon140570   133   IV: 10270693-10270825 Caenorhabditis elegans
Exon140571   140   IV: 10271052-10271191 Caenorhabditis elegans
Exon140572   110   IV: 10271239-10271348 Caenorhabditis elegans
Exon140573   136   IV: 10271393-10271528 Caenorhabditis elegans
Exon140574   284   IV: 10271577-10271860 Caenorhabditis elegans
Exon140575   58   IV: 10271935-10271992 Caenorhabditis elegans
Exon140576   60   IV: 10272041-10272100 Caenorhabditis elegans
Exon140577   84   IV: 10272153-10272236 Caenorhabditis elegans
Exon140578   236   IV: 10272466-10272701 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y43C5A.2.1 10269883 10272701 1

1 Sequence

Length
1446

1 Sequence Ontology Term

Identifier Name Description
transcript