WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y43C5A.5a.1 Sequence Name  Y43C5A.5a.1
Length (nt)  1026   Chromosome Location  IV: 10279464-10281582
Chromosome . Primary Identifier  IV Chromosome Location . Start  10279464
Chromosome Location . End  10281582 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y43C5A.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006568 thk-1 Y43C5A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y43C5A.5a Y43C5A.5a 810   IV: 10279665-10279793

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y43C5A.5a.1 10279464 10281582 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

5 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon140589   330   IV: 10279464-10279793 Caenorhabditis elegans
Exon140590   427   IV: 10279841-10280267 Caenorhabditis elegans
Exon140592   114   IV: 10280315-10280428 Caenorhabditis elegans
Exon140594   113   IV: 10280477-10280589 Caenorhabditis elegans
Exon140596   42   IV: 10281541-10281582 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y43C5A.5a.1 10279464 10281582 -1

1 Sequence

Length
1026

1 Sequence Ontology Term

Identifier Name Description
transcript