WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F01D4.7.1 Sequence Name  F01D4.7.1
Length (nt)  1206   Chromosome Location  IV: 10454318-10457237
Chromosome . Primary Identifier  IV Chromosome Location . Start  10454318
Chromosome Location . End  10457237 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F01D4.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008489 srb-17 F01D4.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F01D4.7 F01D4.7 1092   IV: 10454432-10454497

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F01D4.7.1 10454318 10457237 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon141414   180   IV: 10454318-10454497 Caenorhabditis elegans
Exon141415   99   IV: 10454577-10454675 Caenorhabditis elegans
Exon141416   199   IV: 10455124-10455322 Caenorhabditis elegans
Exon141417   197   IV: 10455365-10455561 Caenorhabditis elegans
Exon141418   219   IV: 10455613-10455831 Caenorhabditis elegans
Exon141419   63   IV: 10456104-10456166 Caenorhabditis elegans
Exon141420   138   IV: 10456219-10456356 Caenorhabditis elegans
Exon141421   79   IV: 10456601-10456679 Caenorhabditis elegans
Exon141422   32   IV: 10457206-10457237 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F01D4.7.1 10454318 10457237 -1

1 Sequence

Length
1206

1 Sequence Ontology Term

Identifier Name Description
transcript