WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T07G12.5a.1 Sequence Name  T07G12.5a.1
Length (nt)  1907   Chromosome Location  IV: 10541428-10545138
Chromosome . Primary Identifier  IV Chromosome Location . Start  10541428
Chromosome Location . End  10545138 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T07G12.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011596 svct-1 T07G12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T07G12.5a T07G12.5a 1668   IV: 10541538-10541884

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T07G12.5a.1 10541428 10545138 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon141646   457   IV: 10541428-10541884 Caenorhabditis elegans
Exon141649   103   IV: 10541956-10542058 Caenorhabditis elegans
Exon141653   165   IV: 10542112-10542276 Caenorhabditis elegans
Exon141655   161   IV: 10542729-10542889 Caenorhabditis elegans
Exon141657   241   IV: 10542964-10543204 Caenorhabditis elegans
Exon141659   124   IV: 10543251-10543374 Caenorhabditis elegans
Exon141661   179   IV: 10543742-10543920 Caenorhabditis elegans
Exon141664   118   IV: 10543974-10544091 Caenorhabditis elegans
Exon141665   72   IV: 10544729-10544800 Caenorhabditis elegans
Exon141666   287   IV: 10544852-10545138 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T07G12.5a.1 10541428 10545138 -1

1 Sequence

Length
1907

1 Sequence Ontology Term

Identifier Name Description
transcript