WormMine: Gene WBGene00014825

• WormBase Gene ID: WBGene00014825
• Gene Name: R13.5
• Sequence Name: R13.5
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by pptr-1; etr-1; and ogt-1 based on RNA-seq studies. Is affected by Doxycycline based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 768

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00014825

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

24 Allele

• gk964278
• gk964078
• gk964500
• gk962765
• gk963382
• gk963106
• gk963107
• tm10948
• gk211529
• gk211530
• WBVar02103778
• gk211528
• WBVar01730986
• WBVar01857460
• gk464827
• gk211531
• gk211532
• gk401065
• gk650425
• gk464178
• gk687638
• gk788567
• gk754452
• gk847232

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00014825
• Start: 10834363
• End: 10835130
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_10835131..10835826
• Length (nt): 696
• Chromosome Location: IV: 10835131-10835826
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed significantly increased expression in CB4856 animals growing in 15mg per mL doxycycline from L1 to L4 larva stage.	edgeR (version 3.24.3), fold change > 4, FDR < 0.01.	WBPaper00062456:doxycycline_upregulated_CB4856_transcript
	Transcripts of noncoding genes that showed significantly increased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_enriched_noncoding-RNA
	Targets of endo-siRNA that showed significantly increased expression in BFF39[pptr-1(tm3103);Pmex-5::gfp::h2b::tbb-2 (mjIs134 II)] comparing to in SX1263[Pmex-5::gfp::h2b::tbb-2 (mjIs134 II)] dissected gonad isolated from 1-day old adult hermaphrodites.	DESeq2, fold change > 2, FDR < 0.01	WBPaper00057140:pptr-1(tm3103)_upregulated
	Transcripts that showed more than 4 fold of expression in CB4856 comparing to in N2 animals.	DESeq2, fold change > 4.	WBPaper00053909:N2_vs_CB4856_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00014825
• Start: 10834363
• End: 10835130
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 768

1 Sequence Ontology Term