WormMine: Gene WBGene00045017

• WormBase Gene ID: WBGene00045017
• Gene Name: F36H1.13
• Sequence Name: F36H1.13
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by mrps-5 based on microarray studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 100

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00045017

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

8 Allele

• gk964278
• gk964078
• gk964500
• gk962765
• WBVar02123093
• WBVar02124207
• gk211940
• gk792480

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00045017
• Start: 11036166
• End: 11036265
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_11033600..11036165
• Length (nt): 2566
• Chromosome Location: IV: 11033600-11036165
• Organism: Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed higher expression in neurons isolated from male day 2 vs day 8.	DESeq2 analysis was then employed for read normalization and differential expression analysis of the counted reads. PCA analysiswas performed along with the DESeq2 package. Genes with a log2(fold-change) > 1 and p-adjusted < 0.05 were considered differentially expressed in subsequent analysis.	WBPaper00066831:male-neuron_aging_downregulated
	Transcripts that showed significantly decreased expression in mrps-5(RNAi) comparing to in control animals.	Fold change > 4, p-value < 0.01	WBPaper00056330:mrps-5(RNAi)_downregulated
Bacteria: P.aeruginosa strain PA14	Transcripts that showed significantly increased expression after infection by P. aeruginosa PA14.	Ballgown was used to calculate differential expression of genes using FPKM data and to generate tables with fold change and P values. Genes were shortlisted with a cutoff of 2-fold change and P values of less than 0.05.	WBPaper00059754:P.aeruginosa_PA14_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00045017
• Start: 11036166
• End: 11036265
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 100

1 Sequence Ontology Term