WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07H5.2a.1 Sequence Name  R07H5.2a.1
Length (nt)  2133   Chromosome Location  IV: 11179645-11183008
Chromosome . Primary Identifier  IV Chromosome Location . Start  11179645
Chromosome Location . End  11183008 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07H5.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011122 cpt-2 R07H5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07H5.2a R07H5.2a 1941   IV: 11179645-11179811

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R07H5.2a.1 11179645 11183008 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon143800   167   IV: 11179645-11179811 Caenorhabditis elegans
Exon143801   256   IV: 11179867-11180122 Caenorhabditis elegans
Exon143802   134   IV: 11180398-11180531 Caenorhabditis elegans
Exon143804   130   IV: 11180580-11180709 Caenorhabditis elegans
Exon143806   160   IV: 11180761-11180920 Caenorhabditis elegans
Exon143808   145   IV: 11180969-11181113 Caenorhabditis elegans
Exon143810   77   IV: 11181160-11181236 Caenorhabditis elegans
Exon143812   421   IV: 11181284-11181704 Caenorhabditis elegans
Exon143814   367   IV: 11181757-11182123 Caenorhabditis elegans
Exon143819   276   IV: 11182733-11183008 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R07H5.2a.1 11179645 11183008 1

1 Sequence

Length
2133

1 Sequence Ontology Term

Identifier Name Description
transcript