WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C29F4.2.1 Sequence Name  C29F4.2.1
Length (nt)  2004   Chromosome Location  IV: 11226502-11230307
Chromosome . Primary Identifier  IV Chromosome Location . Start  11226502
Chromosome Location . End  11230307 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C29F4.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007808 best-7 C29F4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C29F4.2 C29F4.2 1623   IV: 11226711-11226802

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C29F4.2.1 11226502 11230307 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon143842   301   IV: 11226502-11226802 Caenorhabditis elegans
Exon143843   87   IV: 11226854-11226940 Caenorhabditis elegans
Exon143844   125   IV: 11226989-11227113 Caenorhabditis elegans
Exon143845   216   IV: 11227319-11227534 Caenorhabditis elegans
Exon143846   236   IV: 11227583-11227818 Caenorhabditis elegans
Exon143847   231   IV: 11228003-11228233 Caenorhabditis elegans
Exon143848   106   IV: 11228285-11228390 Caenorhabditis elegans
Exon143849   141   IV: 11228442-11228582 Caenorhabditis elegans
Exon143851   75   IV: 11228640-11228714 Caenorhabditis elegans
Exon143852   135   IV: 11228765-11228899 Caenorhabditis elegans
Exon143853   78   IV: 11229155-11229232 Caenorhabditis elegans
Exon143854   56   IV: 11229344-11229399 Caenorhabditis elegans
Exon143855   217   IV: 11230091-11230307 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C29F4.2.1 11226502 11230307 -1

1 Sequence

Length
2004

1 Sequence Ontology Term

Identifier Name Description
transcript