WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05C12.3.1 Sequence Name  C05C12.3.1
Length (nt)  5275   Chromosome Location  IV: 11248884-11259535
Chromosome . Primary Identifier  IV Chromosome Location . Start  11248884
Chromosome Location . End  11259535 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05C12.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001795 gtl-1 C05C12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05C12.3 C05C12.3 5085   IV: 11249004-11249042

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05C12.3.1 11248884 11259535 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

32 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon143899   159   IV: 11248884-11249042 Caenorhabditis elegans
Exon143900   66   IV: 11249092-11249157 Caenorhabditis elegans
Exon143901   79   IV: 11249201-11249279 Caenorhabditis elegans
Exon143902   157   IV: 11249349-11249505 Caenorhabditis elegans
Exon143903   157   IV: 11249863-11250019 Caenorhabditis elegans
Exon143904   156   IV: 11250065-11250220 Caenorhabditis elegans
Exon143905   242   IV: 11250268-11250509 Caenorhabditis elegans
Exon143906   300   IV: 11250624-11250923 Caenorhabditis elegans
Exon143907   244   IV: 11250974-11251217 Caenorhabditis elegans
Exon143908   115   IV: 11251265-11251379 Caenorhabditis elegans
Exon143909   216   IV: 11251641-11251856 Caenorhabditis elegans
Exon143910   134   IV: 11251905-11252038 Caenorhabditis elegans
Exon143911   155   IV: 11252086-11252240 Caenorhabditis elegans
Exon143912   214   IV: 11252497-11252710 Caenorhabditis elegans
Exon143913   313   IV: 11252756-11253068 Caenorhabditis elegans
Exon143914   162   IV: 11253122-11253283 Caenorhabditis elegans
Exon143915   98   IV: 11253348-11253445 Caenorhabditis elegans
Exon143916   149   IV: 11253490-11253638 Caenorhabditis elegans
Exon143917   175   IV: 11253685-11253859 Caenorhabditis elegans
Exon143925   483   IV: 11255812-11256294 Caenorhabditis elegans
Exon143926   124   IV: 11256338-11256461 Caenorhabditis elegans
Exon143927   90   IV: 11256509-11256598 Caenorhabditis elegans
Exon143928   144   IV: 11256692-11256835 Caenorhabditis elegans
Exon143929   199   IV: 11256878-11257076 Caenorhabditis elegans
Exon143930   128   IV: 11257467-11257594 Caenorhabditis elegans
Exon143931   139   IV: 11258008-11258146 Caenorhabditis elegans
Exon143932   85   IV: 11258245-11258329 Caenorhabditis elegans
Exon143933   222   IV: 11258374-11258595 Caenorhabditis elegans
Exon143934   54   IV: 11258659-11258712 Caenorhabditis elegans
Exon143935   92   IV: 11258761-11258852 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05C12.3.1 11248884 11259535 -1

1 Sequence

Length
5275

1 Sequence Ontology Term

Identifier Name Description
transcript