WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54D1.6.1 Sequence Name  F54D1.6.1
Length (nt)  4655   Chromosome Location  IV: 11287811-11294696
Chromosome . Primary Identifier  IV Chromosome Location . Start  11287811
Chromosome Location . End  11294696 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54D1.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010047 F54D1.6 F54D1.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54D1.6 F54D1.6 4272   IV: 11287817-11288107

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54D1.6.1 11287811 11294696 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon144042   297   IV: 11287811-11288107 Caenorhabditis elegans
Exon144043   135   IV: 11288156-11288290 Caenorhabditis elegans
Exon144044   378   IV: 11288345-11288722 Caenorhabditis elegans
Exon144045   93   IV: 11289302-11289394 Caenorhabditis elegans
Exon144046   184   IV: 11289606-11289789 Caenorhabditis elegans
Exon144047   485   IV: 11289849-11290333 Caenorhabditis elegans
Exon144048   239   IV: 11290379-11290617 Caenorhabditis elegans
Exon144049   384   IV: 11290669-11291052 Caenorhabditis elegans
Exon144050   470   IV: 11291304-11291773 Caenorhabditis elegans
Exon144051   207   IV: 11291822-11292028 Caenorhabditis elegans
Exon144052   357   IV: 11292079-11292435 Caenorhabditis elegans
Exon144053   184   IV: 11292483-11292666 Caenorhabditis elegans
Exon144054   86   IV: 11292714-11292799 Caenorhabditis elegans
Exon144055   207   IV: 11292851-11293057 Caenorhabditis elegans
Exon144056   514   IV: 11293188-11293701 Caenorhabditis elegans
Exon144057   435   IV: 11294262-11294696 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54D1.6.1 11287811 11294696 1

1 Sequence

Length
4655

1 Sequence Ontology Term

Identifier Name Description
transcript