WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01G1.3.1 Sequence Name  T01G1.3.1
Length (nt)  3609   Chromosome Location  IV: 11365621-11371792
Chromosome . Primary Identifier  IV Chromosome Location . Start  11365621
Chromosome Location . End  11371792 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01G1.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011338 sec-31 T01G1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01G1.3 T01G1.3 3252   IV: 11365938-11365991

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01G1.3.1 11365621 11371792 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon144221   371   IV: 11365621-11365991 Caenorhabditis elegans
Exon144222   120   IV: 11366130-11366249 Caenorhabditis elegans
Exon144223   269   IV: 11366297-11366565 Caenorhabditis elegans
Exon144224   241   IV: 11366612-11366852 Caenorhabditis elegans
Exon144225   153   IV: 11366903-11367055 Caenorhabditis elegans
Exon144226   258   IV: 11367102-11367359 Caenorhabditis elegans
Exon144227   155   IV: 11367407-11367561 Caenorhabditis elegans
Exon144228   255   IV: 11367609-11367863 Caenorhabditis elegans
Exon144229   473   IV: 11367911-11368383 Caenorhabditis elegans
Exon144230   95   IV: 11368429-11368523 Caenorhabditis elegans
Exon144231   388   IV: 11370283-11370670 Caenorhabditis elegans
Exon144232   173   IV: 11370776-11370948 Caenorhabditis elegans
Exon144233   217   IV: 11370994-11371210 Caenorhabditis elegans
Exon144234   195   IV: 11371259-11371453 Caenorhabditis elegans
Exon144235   140   IV: 11371500-11371639 Caenorhabditis elegans
Exon144236   106   IV: 11371687-11371792 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01G1.3.1 11365621 11371792 -1

1 Sequence

Length
3609

1 Sequence Ontology Term

Identifier Name Description
transcript