WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00201374 Gene Name  C10C6.12
Sequence Name  ? C10C6.12 Organism  Caenorhabditis elegans
Automated Description  Enriched in anterior ganglion (post) and neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by pmt-2 based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 209
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00201374

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C10C6.12 C10C6.12 209   IV: 11455812-11456020
 

Other

0 CDSs

0 RNAi Result

6 Allele

Public Name
gk964278
gk964078
gk964500
gk962765
gk963703
gk400747

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00201374 11455812 11456020 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_11447068..11455811   8744 IV: 11447068-11455811 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm. Fold change > 2, p-value < 0.05. WBPaper00060661:sensory-neuron_enriched
  Transcripts that showed significantly decreased expression in pmt-2(RNAi) animals comparing to control animals iinjected with empty vector. Fold-change > 1.5, ANOVA P values < 0.05. WBPaper00055482:pmt-2(RNAi)_downregulated
  Single-cell RNA-Seq cell group 66_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:66_0
  Single-cell RNA-Seq cell group 55_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:55_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00201374 11455812 11456020 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
209

1 Sequence Ontology Term