WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F40F11.2.1 Sequence Name  F40F11.2.1
Length (nt)  5553   Chromosome Location  IV: 11594244-11601703
Chromosome . Primary Identifier  IV Chromosome Location . Start  11594244
Chromosome Location . End  11601703 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F40F11.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009587 mig-38 F40F11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F40F11.2 F40F11.2 4824   IV: 11594325-11594332

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F40F11.2.1 11594244 11601703 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon144898   89   IV: 11594244-11594332 Caenorhabditis elegans
Exon144900   100   IV: 11594696-11594795 Caenorhabditis elegans
Exon144901   222   IV: 11595310-11595531 Caenorhabditis elegans
Exon144902   99   IV: 11595582-11595680 Caenorhabditis elegans
Exon144903   229   IV: 11596180-11596408 Caenorhabditis elegans
Exon144904   128   IV: 11596456-11596583 Caenorhabditis elegans
Exon144905   1384   IV: 11596638-11598021 Caenorhabditis elegans
Exon144906   303   IV: 11598180-11598482 Caenorhabditis elegans
Exon144907   2120   IV: 11598530-11600649 Caenorhabditis elegans
Exon144908   103   IV: 11600706-11600808 Caenorhabditis elegans
Exon144909   776   IV: 11600928-11601703 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F40F11.2.1 11594244 11601703 1

1 Sequence

Length
5553

1 Sequence Ontology Term

Identifier Name Description
transcript