WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T22B3.2a.1 Sequence Name  T22B3.2a.1
Length (nt)  3206   Chromosome Location  IV: 11704353-11708264
Chromosome . Primary Identifier  IV Chromosome Location . Start  11704353
Chromosome Location . End  11708264 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T22B3.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011910 alg-3 T22B3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T22B3.2a T22B3.2a 3099   IV: 11704365-11704419

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T22B3.2a.1 11704353 11708264 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon145152   67   IV: 11704353-11704419 Caenorhabditis elegans
Exon145155   158   IV: 11704703-11704860 Caenorhabditis elegans
Exon145156   173   IV: 11704910-11705082 Caenorhabditis elegans
Exon145159   885   IV: 11705128-11706012 Caenorhabditis elegans
Exon145162   217   IV: 11706065-11706281 Caenorhabditis elegans
Exon145165   508   IV: 11706328-11706835 Caenorhabditis elegans
Exon145168   263   IV: 11706886-11707148 Caenorhabditis elegans
Exon145171   125   IV: 11707193-11707317 Caenorhabditis elegans
Exon145174   498   IV: 11707362-11707859 Caenorhabditis elegans
Exon145177   125   IV: 11707906-11708030 Caenorhabditis elegans
Exon145182   187   IV: 11708078-11708264 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T22B3.2a.1 11704353 11708264 1

1 Sequence

Length
3206

1 Sequence Ontology Term

Identifier Name Description
transcript