WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K01A6.2c.1 Sequence Name  K01A6.2c.1
Length (nt)  3599   Chromosome Location  IV: 11715049-11729280
Chromosome . Primary Identifier  IV Chromosome Location . Start  11715049
Chromosome Location . End  11729280 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K01A6.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010444 magi-1 K01A6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K01A6.2c K01A6.2c 3015   IV: 11715090-11715108

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K01A6.2c.1 11715049 11729280 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon145224   60   IV: 11715049-11715108 Caenorhabditis elegans
Exon145226   65   IV: 11715156-11715220 Caenorhabditis elegans
Exon145228   67   IV: 11715397-11715463 Caenorhabditis elegans
Exon145230   238   IV: 11715984-11716221 Caenorhabditis elegans
Exon145232   197   IV: 11716267-11716463 Caenorhabditis elegans
Exon145235   120   IV: 11716860-11716979 Caenorhabditis elegans
Exon145250   133   IV: 11722520-11722652 Caenorhabditis elegans
Exon145253   96   IV: 11722990-11723085 Caenorhabditis elegans
Exon145258   139   IV: 11724956-11725094 Caenorhabditis elegans
Exon145263   282   IV: 11725145-11725426 Caenorhabditis elegans
Exon145269   654   IV: 11726353-11727006 Caenorhabditis elegans
Exon145274   882   IV: 11727056-11727937 Caenorhabditis elegans
Exon145277   110   IV: 11728119-11728228 Caenorhabditis elegans
Exon145280   147   IV: 11728371-11728517 Caenorhabditis elegans
Exon145286   409   IV: 11728872-11729280 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K01A6.2c.1 11715049 11729280 1

1 Sequence

Length
3599

1 Sequence Ontology Term

Identifier Name Description
transcript