WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00199485 Gene Name  M117.11
Sequence Name  ? M117.11 Organism  Caenorhabditis elegans
Automated Description  Enriched in AVK based on RNA-seq studies. Is affected by cep-1 and etr-1 based on RNA-seq studies. Is affected by Tunicamycin based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 218
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00199485

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:M117.11 M117.11 218   IV: 11821992-11822209
 

Other

0 CDSs

0 RNAi Result

8 Allele

Public Name
gk964278
gk964078
gk964500
gk962765
gk592754
gk885938
gk708316
WBVar01967066

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00199485 11821992 11822209 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in animals treated with 25ug per mL tunicamycin for 4 hours, comparing to control animals. Fold-change > 1.5, ANOVA P values < 0.05. WBPaper00055482:Tunicamycin_upregulated
  Transcripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage. edgeR, FDR < 0.001, fold change > 2. WBPaper00055565:AVK_enriched
  Transcripts of noncoding genes that showed significantly increased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_enriched_noncoding-RNA
  ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq. ncRNAs with more than 2 fold difference in expression are considered differentially expressed WBPaper00045380:cep-1(gk138)_upregulated_normal

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00199485 11821992 11822209 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
218

1 Sequence Ontology Term