WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F38H4.7.1 Sequence Name  F38H4.7.1
Length (nt)  1977   Chromosome Location  IV: 11850923-11855159
Chromosome . Primary Identifier  IV Chromosome Location . Start  11850923
Chromosome Location . End  11855159 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38H4.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006415 tag-30 F38H4.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F38H4.7 F38H4.7 1809   IV: 11851034-11851192

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F38H4.7.1 11850923 11855159 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon145555   270   IV: 11850923-11851192 Caenorhabditis elegans
Exon145556   428   IV: 11851448-11851875 Caenorhabditis elegans
Exon145558   142   IV: 11851943-11852084 Caenorhabditis elegans
Exon145563   629   IV: 11853191-11853819 Caenorhabditis elegans
Exon145565   156   IV: 11853868-11854023 Caenorhabditis elegans
Exon145568   185   IV: 11854434-11854618 Caenorhabditis elegans
Exon145570   54   IV: 11854665-11854718 Caenorhabditis elegans
Exon145572   32   IV: 11854767-11854798 Caenorhabditis elegans
Exon145574   75   IV: 11854861-11854935 Caenorhabditis elegans
Exon145579   6   IV: 11855154-11855159 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F38H4.7.1 11850923 11855159 -1

1 Sequence

Length
1977

1 Sequence Ontology Term

Identifier Name Description
transcript