WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C29E6.2a.1 Sequence Name  C29E6.2a.1
Length (nt)  3741   Chromosome Location  IV: 11864532-11875733
Chromosome . Primary Identifier  IV Chromosome Location . Start  11864532
Chromosome Location . End  11875733 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C29E6.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007801 trpa-1 C29E6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C29E6.2a C29E6.2a 3636   IV: 11864547-11864628

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C29E6.2a.1 11864532 11875733 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon145627   97   IV: 11864532-11864628 Caenorhabditis elegans
Exon145628   412   IV: 11865069-11865480 Caenorhabditis elegans
Exon145630   979   IV: 11866041-11867019 Caenorhabditis elegans
Exon145632   94   IV: 11867094-11867187 Caenorhabditis elegans
Exon145634   87   IV: 11867235-11867321 Caenorhabditis elegans
Exon145643   166   IV: 11873251-11873416 Caenorhabditis elegans
Exon145645   312   IV: 11873469-11873780 Caenorhabditis elegans
Exon145647   454   IV: 11873979-11874432 Caenorhabditis elegans
Exon145649   408   IV: 11874498-11874905 Caenorhabditis elegans
Exon145651   471   IV: 11874956-11875426 Caenorhabditis elegans
Exon145654   261   IV: 11875473-11875733 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C29E6.2a.1 11864532 11875733 1

1 Sequence

Length
3741

1 Sequence Ontology Term

Identifier Name Description
transcript