WormMine: Gene WBGene00200459

• WormBase Gene ID: WBGene00200459
• Gene Name: F38H4.15
• Sequence Name: F38H4.15
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including etr-1; hsf-1; and ints-4 based on RNA-seq studies. Is affected by multi-walled carbon nanotube based on RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 384

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00200459

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F38H4.15	F38H4.15	384	IV: 11857100-11857483

Other

0 CDSs

0 RNAi Result

12 Allele

• gk964278
• gk964078
• gk964500
• gk962765
• WBVar01858684
• gk440553
• gk874171
• gk539576
• WBVar02059177
• gk356443
• gk598574
• gk525951

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00200459
• Start: 11857100
• End: 11857483
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_11856352..11857099
• Length (nt): 748
• Chromosome Location: IV: 11856352-11857099
• Organism: Caenorhabditis elegans

9 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Osmotic stress	Transcripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when food was present	DESeq(version 1.10.1), FDR < 0.05.	WBPaper00050726:OsmoticStress_regulated_Food
	Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
	Transcripts that showed significantly increased expression in ints-1(RNAi) animals comparing to control RNAi animals, at late L3 larva stage.	DESeq2, v1.12.0, fold change > 2, FDR < 0.05	WBPaper00057068:ints-4(RNAi)_upregulated
	Transcripts that interact with 3xFLAG-DLC-1 as identified by immunoprecipitation followed by RNA sequencing.	DESeq2, fold change > 2,, p-value < 0.01	WBPaper00055334:DLC-1_interacting
	Transcripts that showed significantly increased expression in uthIs235 [sur-5p-hsf-1-unc-54 3'UTR + myo-2p-tdTomato-unc-54 3' UTR] comparing to in N2.	DESeq2 FDR < 0.05, fold change > 2.	WBPaper00067474:HSF-1(OverExpress)_upregulated
	Genes that showed significantly decreased expression after exposure to 1mg/L MWCNTs from L1 larva to young adult.	Transcripts with false discovery rate-corrected p-values < 0.05 and fold change > 2 were defined as differentially expressed.	WBPaper00049377:MWCNT_downregulated
	Transcripts of noncoding genes that showed significantly increased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_enriched_noncoding-RNA
	ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_upregulated_normal
male mating	Transcripts that showed significantly increased expression in sterile glp-1(e2144) animals after exposed to males during day 2 to day 7 adult stage.	DESeq2 v.1.10.1, fold change > 2, FDR < 0.05.	WBPaper00065315:mating_upregulated_Day2-7

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00200459
• Start: 11857100
• End: 11857483
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 384

1 Sequence Ontology Term