WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C29E6.1a.1 Sequence Name  C29E6.1a.1
Length (nt)  2631   Chromosome Location  IV: 11885615-11891081
Chromosome . Primary Identifier  IV Chromosome Location . Start  11885615
Chromosome Location . End  11891081 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C29E6.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002827 let-653 C29E6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C29E6.1a C29E6.1a 2439   IV: 11885618-11885678

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C29E6.1a.1 11885615 11891081 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon145660   64   IV: 11885615-11885678 Caenorhabditis elegans
Exon145662   294   IV: 11885730-11886023 Caenorhabditis elegans
Exon145665   279   IV: 11886446-11886724 Caenorhabditis elegans
Exon145668   206   IV: 11886770-11886975 Caenorhabditis elegans
Exon145671   161   IV: 11888424-11888584 Caenorhabditis elegans
Exon145675   477   IV: 11888697-11889173 Caenorhabditis elegans
Exon145676   297   IV: 11889557-11889853 Caenorhabditis elegans
Exon145679   370   IV: 11890084-11890453 Caenorhabditis elegans
Exon145682   184   IV: 11890551-11890734 Caenorhabditis elegans
Exon145686   299   IV: 11890783-11891081 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C29E6.1a.1 11885615 11891081 1

1 Sequence

Length
2631

1 Sequence Ontology Term

Identifier Name Description
transcript