WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014991 Gene Name  ZK829.12
Sequence Name  ? ZK829.12 Organism  Caenorhabditis elegans
Automated Description  Enriched in ASHL and ASJR based on single-cell RNA-seq studies. Is affected by etr-1 and qui-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 1318
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014991

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

31 Allele

Public Name
gk964278
gk964078
gk964500
gk962765
gk964475
gk964320
gk962528
WBVar02021312
WBVar00192247
WBVar00192246
WBVar01668816
gk382649
gk500720
gk912360
gk762123
gk497657
gk213721
gk213722
gk213719
gk213720
gk213723
gk213724
WBVar01581801
WBVar01858870
WBVar01858871
WBVar01858872
WBVar01858873
WBVar01858869
gk438240
gk780927

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00014991 11962538 11963855 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_11961536..11962537   1002 IV: 11961536-11962537 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells. DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction. WBPaper00060811:L1_vs_adult_upregulated_neural
  Transcripts that showed significantly decreased expression in ADL neurons of qui-1(db104) comparing to in N2 at day 1 adult stage. tximport 1.14.2 and DEseq2 1.26.0. Fold change > 2, FDR < 0.05. WBPaper00062520:qui-1(db104)_downregulated
  Transcripts of noncoding genes that showed significantly increased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_enriched_noncoding-RNA
  Single-cell RNA-Seq cell group 47_1 expressed in neuron. scVI 0.6.0 WBPaper00065841:47_1
  Single-cell RNA-Seq cell group 99_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:99_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00014991 11962538 11963855 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1318

1 Sequence Ontology Term