WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0001.1a.1 Sequence Name  B0001.1a.1
Length (nt)  996   Chromosome Location  IV: 12129504-12135096
Chromosome . Primary Identifier  IV Chromosome Location . Start  12129504
Chromosome Location . End  12135096 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0001.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003010 lin-24 B0001.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0001.1a B0001.1a 816   IV: 12129507-12129638

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0001.1a.1 12129504 12135096 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

6 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon146487   135   IV: 12129504-12129638 Caenorhabditis elegans
Exon146489   113   IV: 12131947-12132059 Caenorhabditis elegans
Exon146490   113   IV: 12132814-12132926 Caenorhabditis elegans
Exon146492   223   IV: 12133050-12133272 Caenorhabditis elegans
Exon146495   91   IV: 12134632-12134722 Caenorhabditis elegans
Exon146500   321   IV: 12134776-12135096 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0001.1a.1 12129504 12135096 1

1 Sequence

Length
996

1 Sequence Ontology Term

Identifier Name Description
transcript